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  1. NIF
  2. NIF-11643

Derive phenotypes from MPD data

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    • NIF
    • Issues closed as MONARCH has transitioned from UCSD services

    Description

      I'd like the MPD raw data to be mapped to the MP terms as suggested by their measurements.

      I figure a safe choice is to

      Data is already ingested [NIF-7007], and part of the resource nif-0000-03160

      Let's try a few different ways of getting the MPs. Let's use a cutoff of >2 s.d. from the strain_means for assignment.

      I am not sure if the best method for deriving this is to write it in the SQL directly, or in an external script that dumps a file that we subsequently import. Let's investigate both.

      Raw data can be found here: http://phenome.jax.org/download/

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            kshefchek Kent Shefchek
            nlw Nicole Washington
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