Details
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Sub-task
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Resolution: Canceled
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Major
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None
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None
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None
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NIF
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Issues closed as MONARCH has transitioned from UCSD services
Description
Pull the Mouse phenotype data from OMIM and HPO tables to generate gene-to-disease, disease-to-phenotype for precompute pipelines. This should be placed into:
https://phenotype-ontologies.googlecode.com/svn/trunk/data/Homo_sapiens
Presently has:
Hs-disease-labels.txt
Hs-disease-to-phenotype-C.txt
Hs-disease-to-phenotype-I.txt
Hs-disease-to-phenotype-O.txt
Hs-gene-labels.txt
Hs-gene-to-disease.txt
Generated by SQL queries (see attached).
These ought to be replaced to REST calls to nif_0000_03216_9 and nlx_151835_1.
I think eventually we may have a unified disease-to-gene mapping table when we have more resources mapping genes to diseases, but that isn't available yet.