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  1. NIF
  2. NIF-11860

DISCO: add new resource SpBase

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    • NIF
    • Issues closed as MONARCH has transitioned from UCSD services

    Description

      SpBase: Sea Urchin Database
      http://whis.caltech.edu:5430/
      SPARQL query (from their biomart):

      PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
      PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
      PREFIX owl: <http://www.w3.org/2002/07/owl#>

      PREFIX accesspoint: <http://whis.caltech.edu:5430/martsemantics/gene_info_table_config/ontology#>
      PREFIX class: <biomart://whis.caltech.edu:5430/martsemantics/gene_info_table_config/ontology/class#>
      PREFIX dataset: <biomart://whis.caltech.edu:5430/martsemantics/gene_info_table_config/ontology/dataset#>
      PREFIX attribute: <biomart://whis.caltech.edu:5430/martsemantics/gene_info_table_config/ontology/attribute#>

      SELECT ?a0 ?a1 ?a2 ?a3 ?a4 ?a5 ?a6 ?a7 ?a8 ?a9 ?a10 ?a11 ?a12 ?a13 ?a14 ?a15 ?a16 ?a17 ?a18 ?a19
      FROM dataset:public
      WHERE {
      ?mart attribute:gene_info_table__spu_id_106 ?a0 .
      ?mart attribute:gene_info_table__common_name_106 ?a1 .
      ?mart attribute:gene_info_table__synonyms_106 ?a2 .
      ?mart attribute:gene_info_table__annotation_type_106 ?a3 .
      ?mart attribute:gene_info_table__manual_anno_106 ?a4 .
      ?mart attribute:gene_info_table_functional_category_table_class_105 ?a5 .
      ?mart attribute:gene_info_table_functional_category_table_anno_type_105 ?a6 .
      ?mart attribute:gene_info_table_functional_category_table_sub_class_105 ?a7 .
      ?mart attribute:gene_info_table_go_table_go_num_107 ?a8 .
      ?mart attribute:gene_info_table_go_table_ot_type_107 ?a9 .
      ?mart attribute:gene_info_table_go_table_evidence_code_107 ?a10 .
      ?mart attribute:gene_info_table_go_table_ot_data_107 ?a11 .
      ?mart attribute:gene_info_table_qpcr_timecourse_table_express_level_1010 ?a12 .
      ?mart attribute:gene_info_table_qpcr_timecourse_table_timepoint_1010 ?a13 .
      ?mart attribute:gene_info_table_expression_table_domain_103 ?a14 .
      ?mart attribute:gene_info_table_spatial_expression_table_space_time_1013 ?a15 .
      ?mart attribute:gene_info_table_spatial_expression_table_expression_1013 ?a16 .
      ?mart attribute:gene_info_table_spatial_expression_table_confidence_1013 ?a17 .
      ?mart attribute:gene_info_table_expression_table_time_103 ?a18 .
      ?mart attribute:gene_info_table_reference_table_pmid_1012 ?a19
      }

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            bandrow Anita Bandrowski (use this one!)
            nlw Nicole Washington
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              Updated:
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