Details
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Task
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Resolution: Fixed
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Major
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None
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Data 0.1, Data 0.3
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NIF
Description
ftp://ftp.informatics.jax.org/pub/reports/index.html#pheno
MGI_PhenoGenoMP.rpt
we will need additional information brought in for MGI. including some basic information about strains, alleles, and genes.
ftp://ftp.informatics.jax.org/pub/reports/MGI_Strain.rpt
ftp://ftp.informatics.jax.org/pub/reports/MGI_PhenotypicAllele.rpt
ftp://ftp.informatics.jax.org/pub/reports/MGI_QTLAllele.rpt
ftp://ftp.informatics.jax.org/pub/reports/MRK_Reference.rpt
these stats will give us a sense if we've imported the data correctly:
http://www.informatics.jax.org/mgihome/homepages/stats/all_stats.shtml#allstats_pheno
NIF has access to the MGI db directly, so we can import necessary tables, and build the geno-pheno and strain-geno-allele tables we need.
Attachments
Issue Links
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NIF-11787 Test-build UPheno from DISCO resources
- Closed