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  1. NIF
  2. NIF-11836

DISCO: add MGI genotype-phenotype associations

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    • NIF

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      ftp://ftp.informatics.jax.org/pub/reports/index.html#pheno

      MGI_PhenoGenoMP.rpt

      we will need additional information brought in for MGI. including some basic information about strains, alleles, and genes.

      ftp://ftp.informatics.jax.org/pub/reports/MGI_Strain.rpt
      ftp://ftp.informatics.jax.org/pub/reports/MGI_PhenotypicAllele.rpt
      ftp://ftp.informatics.jax.org/pub/reports/MGI_QTLAllele.rpt
      ftp://ftp.informatics.jax.org/pub/reports/MRK_Reference.rpt

      these stats will give us a sense if we've imported the data correctly:
      http://www.informatics.jax.org/mgihome/homepages/stats/all_stats.shtml#allstats_pheno

      NIF has access to the MGI db directly, so we can import necessary tables, and build the geno-pheno and strain-geno-allele tables we need.

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              nlw Nicole Washington
              cmungall Chris Mungall
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