DISCO: Worm geno-pheno data

Import geno-pheno data for c. elegans.

ftp://ftp.wormbase.org/pub/wormbase/releases/current-www.wormbase.org-release/
The above address should redirect to the most recent, public release of everything.

Here's a partial list:

ftp://ftp.wormbase.org/pub/wormbase/releases/current-www.wormbase.org-release/ONTOLOGY/phenotype_association.WS235.wb --> these are the allele-pheno annotations

ftp://ftp.wormbase.org/pub/wormbase/releases/current-www.wormbase.org-release/ONTOLOGY/anatomy_association.WS235.wb --> gene-expression/localization

ftp://ftp.wormbase.org/pub/wormbase/releases/current-www.wormbase.org-release/ONTOLOGY/rnai_phenotypes.WS235.wb --> RNAi phenotypes

Genes, and maybe alleles, are here:

ftp://ftp.wormbase.org/pub/wormbase/releases/current-www.wormbase.org-release/species/c_elegans/c_elegans.WS235.annotations.gff3.gz

ftp://ftp.wormbase.org/pub/wormbase/releases/current-www.wormbase.org-release/species/c_elegans/annotation/c_elegans.WS235.gene_interactions.txt.gz

ftp://ftp.wormbase.org/pub/wormbase/releases/current-www.wormbase.org-release/species/c_elegans/annotation/c_elegans.WS235.knockout_consortium_alleles.xml.gz

Ontology files (to be used as lookups):

ftp://ftp.wormbase.org/pub/wormbase/releases/current-www.wormbase.org-release/ONTOLOGY/anatomy_ontology.WS235.obo

ftp://ftp.wormbase.org/pub/wormbase/releases/current-www.wormbase.org-release/ONTOLOGY/phenotype_ontology.WS235.obo

Will not be included but important to look have as fallback reference nonetheless:

ftp://ftp.wormbase.org/pub/wormbase/releases/current-www.wormbase.org-release/acedb/ --> complete data dumps