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  1. NIF
  2. NIF-11817

Specify example queries for GENO

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    • NIF
    • Issues closed as MONARCH has transitioned from UCSD services

    Description

      We should have a test suite of SPARQL queries for GENO.

      E.g.
      What strains S with genotype Gt are available in organism X that have mutations M in gene G

      See: https://docs.google.com/document/d/15HdByqF-Zv_TgTCUbD9hs3MaX7pFdWCYB85DtJbgp0k/edit#heading=h.8ud9l061glaw

      These would be used in 2 (or more) ways.

      1. As part of a junit suite, working in conjunction with test RDF datasets. (creation of a junit suite for the RDF should be a separate item)

      2. As example queries on the low-level SPARQL interface. Many bio rdf stores already have such a set of test queries.

      See:
      http://sparql.obodev.neurocommons.org/
      under "insert query"

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            cmungall Chris Mungall
            cmungall Chris Mungall
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