Details
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Task
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Resolution: Canceled
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Major
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None
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None
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None
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NIF
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Issues closed as MONARCH has transitioned from UCSD services
Description
We should have a test suite of SPARQL queries for GENO.
E.g.
What strains S with genotype Gt are available in organism X that have mutations M in gene G
These would be used in 2 (or more) ways.
1. As part of a junit suite, working in conjunction with test RDF datasets. (creation of a junit suite for the RDF should be a separate item)
2. As example queries on the low-level SPARQL interface. Many bio rdf stores already have such a set of test queries.
See:
http://sparql.obodev.neurocommons.org/
under "insert query"