Details
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Task
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Resolution: Canceled
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Minor
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None
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Data 0.1
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NIF
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Issues closed as MONARCH has transitioned from UCSD services
Description
DISCO id: nif-0000-00134
RGD states it has an interop file, but it's blank. So, we need to pull in data!
Their data files are nicely mapped to ontologies, here:
ftp://rgd.mcw.edu/pub/data_release/annotated_rgd_objects_by_ontology/with_terms/
Take just the "rattus" data. (We actually need to investigate further, here, whether or not the "human" and "mouse" annotations in RGD are things they curated, and therefore found nowhere else, or if they are slurped from outside resources....I'm assuming the latter.)
with a nice readme about the format.
ftp://rgd.mcw.edu/pub/data_release/annotated_rgd_objects_by_ontology/with_terms/WITHTERMS_README
Note that the ontologies used for diseases come from CTD
- rdo: "RGD Disease Ontology" imported from the Comparative Toxicogenomics Database (CTD) (originally referred to as "ctd", replaces 'do' ontology).
- nbo: Neuro Behavioral Ontology (replaces 'bo' ontology)
also, QTLs:
ftp://rgd.mcw.edu/pub/data_release/QTLS_RAT.txt
also, orthologs:
ftp://rgd.mcw.edu/pub/data_release/RGD_ORTHOLOGS.txt
also, strains:
ftp://rgd.mcw.edu/pub/data_release/STRAINS.txt
Attachments
Issue Links
- blocks
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NIF-11787 Test-build UPheno from DISCO resources
- Closed