Uploaded image for project: 'NIF'
  1. NIF
  2. NIF-11684

DISCO: import UCSC known genes

    XMLWordPrintable

Details

    • New Feature Request
    • Resolution: Canceled
    • Major
    • None
    • None
    • None
    • NIF
    • Issues closed as MONARCH has transitioned from UCSD services

    Description

      UCSC keeps a list of known genes that coincides with their genome builds. we should take it in, and build a set similar to NCBI gene.

      see: http://genome.ucsc.edu/FAQ/FAQdownloads.html#download31

      alternatively, these could be fetched from their mysql public instance rather than ftp if desired. table is "knownGene". they also have mappings to other resources, like ensembl.

      Attachments

        Activity

          People

            bandrow Anita Bandrowski (use this one!)
            nlw Nicole Washington
            Votes:
            0 Vote for this issue
            Watchers:
            2 Start watching this issue

            Dates

              Created:
              Updated:
              Resolved: