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  1. NIF
  2. NIF-11679

service: get variant features related to X

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    • NIF
    • Issues closed as MONARCH has transitioned from UCSD services

    Description

      in the monarch api, we need the ability to generate JSON/GFF3 of variant features, in order to display them on a gene/protein cartoon, genome browser, karyotype viewer, etc.

      this should be called from any "page" that the user is on, fetching the features related to the entity on page X. To start, X can be genes, phenotypes, diseases (ids).

      the variants to fetch can be determined through a first call to
      http://beta.neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_152525-8

      and then fetching the pre-formatted gff3 with filters on the query by variant id here:
      http://beta.neuinfo.org/services/v1/federation/data/nlx_152525-9.tsv?q=*&offset=0

      eventually, we should just generate the formatted data on the fly within this layer of the api based on the first query, and then eliminate the -9 view.

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              nlw Nicole Washington
              nlw Nicole Washington
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