Details
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New Feature Request
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Resolution: Canceled
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Major
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None
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MONARCH 0.2
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NIF
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Issues closed as MONARCH has transitioned from UCSD services
Description
for our first pre-computed dataset, we need to generate:
mouse genotype x human disease
zebrafish (geno+morpholino) x human disease
damian's offered to let us run it on the sanger farm initially. this will need to be broken down into a few tickets:
1. get owlsim2 installed / tested on sanger machines
2. update owltools to allow cached reasoned ontology to be used
3. devise strategy for dividing up data files for cluster processing, and owlsim arguments (all metrics? cutoffs? tab vs csv?. figure out the desired format for data dumping.
4. run it!
Attachments
Issue Links
- is broken down by
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NIF-11752 Prepare files for first all-by-all precompute
- Closed