Uploaded image for project: 'NIF'
  1. NIF
  2. NIF-11665

Run initial owlsim disease-genotype all-by-all on Sanger Farm

    XMLWordPrintable

Details

    • NIF
    • Issues closed as MONARCH has transitioned from UCSD services

    Description

      for our first pre-computed dataset, we need to generate:

      mouse genotype x human disease
      zebrafish (geno+morpholino) x human disease

      damian's offered to let us run it on the sanger farm initially. this will need to be broken down into a few tickets:

      1. get owlsim2 installed / tested on sanger machines
      2. update owltools to allow cached reasoned ontology to be used
      3. devise strategy for dividing up data files for cluster processing, and owlsim arguments (all metrics? cutoffs? tab vs csv?. figure out the desired format for data dumping.
      4. run it!

      Attachments

        Issue Links

          Activity

            People

              nlw Nicole Washington
              nlw Nicole Washington
              Votes:
              0 Vote for this issue
              Watchers:
              3 Start watching this issue

              Dates

                Created:
                Updated:
                Resolved: