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  1. NIF
  2. NIF-11644

need to standardize ontology prefixes in DO

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    • NIF
    • Issues closed as MONARCH has transitioned from UCSD services

    Description

      we need to make sure that all ontology sources use the same "idspaces" or prefixes for the ontologies in the xrefs/equivalence classes.

      in particular, i think UMLS and MESH need updating.

      UMLS is currently listed as UMLS_CUI
      and MESH is listed as MSH

      can these be standardized to UMLS and MESH?

      (we need to make sure that all this information is consistent in the ontology as well as the data sources we ingest/massage)

      also, i think these need to be documented somewhere, if not at DO, then within our Monarch documentation.

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              sessaid Shahim Essaid
              nlw Nicole Washington
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