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  1. NIF
  2. NIF-11629

import GWAS ontology annotation from EBI

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    • NIF
    • Issues closed as MONARCH has transitioned from UCSD services

    Description

      There are some annotations in OWL files here somewhere, where they have mapped the disease/trait from GWAS studies to some kind of ontology:

      http://www.ebi.ac.uk/fgpt/gwas/
      http://www.ebi.ac.uk/fgpt/gwas/#downloadstab

      Or just:
      https://github.com/tburdett/goci

      Since the source annotations are in OWL, we might just pull them in directly into the triplestore. However, we won't get all the nice built-in versioning mechanisms like we do in DISCO.

      A view probably should be created that is a mashup between the GWAS catalog and these annotations, but if we import directly into the triplestore, I wouldn't know how to do that.

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              larawayb Bryan Laraway
              nlw Nicole Washington
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